rs409408 chr16:77584291 C>T
- Sequence
gttgaaactcgttacttggtaatc[C/T]cctcgaaggcagaagctaaatctt
- ASB in cell types
- A549 (lung carcinoma) 22RV1 (prostate carcinoma) MCF7 (Invasive ductal breast carcinoma) RWPE1 (prostate epithelial cells)
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.29 | -0.12 | 1.96 | n/a | n/a | |||
| RAD21_HUMAN | 1.13 | -0.04 | 1.95 | n/a | n/a | |||
| CTCF_HUMAN | 1.03 | 0.35 | 1.54 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP acute lung injury following major trauma, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd