rs411898 chr19:6617566 A>G
- Sequence
catgaataatcagagaaacatgac[A/G]tcaccaaaagaacaaaataaagta
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ATF2_HUMAN CREB1_HUMAN ATF3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF2_HUMAN | n/a | 3.87 | 2.00 | 0.43 | Weak Concordant | |||
| CREB1_HUMAN | -3.51 | 2.96 | 1.33 | 5.69 | Concordant | |||
| ATF3_HUMAN | -0.43 | 3.37 | 2.00 | 4.07 | Concordant |
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Motif analysis
