rs41269079 chr1:44786343 T>A
- Sequence
accggctgtcccaggactcgcggt[T/A]ccgcgttcctgtcgcagtccagac
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) erythroid cells HEK293T (embryonic kidney)
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | -0.29 | 1.20 | 1.98 | |||
| K562 (myelogenous leukemia) | 0.72 | 0.35 | 1.29 | |||
| erythroid cells | 2.97 | n/a | 2.00 | |||
| HEK293T (embryonic kidney) | -0.46 | 0.96 | 1.79 | |||
| GM12878 (female B-cells) | 0.69 | 0.44 | 1.31 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid