rs41269085 chr1:44819976 C>T
- Sequence
agtaaaaggcgaaagatttatgcg[C/T]tttgaagagaaacccgagtatatt
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HEK293T (embryonic kidney)
- ASB for transcription factors
- KDM5B_HUMAN PEBB_HUMAN SMAD5_HUMAN ZBED1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM5B_HUMAN | 1.95 | -2.29 | 1.50 | n/a | n/a | |||
| PEBB_HUMAN | 2.03 | -2.27 | 1.33 | n/a | No Hit | |||
| SMAD5_HUMAN | 1.55 | -0.41 | 1.42 | n/a | n/a | |||
| ZBED1_HUMAN | 1.61 | -1.78 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.02 | 0.41 | 1.92 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood