rs414171 chr3:50612068 A>T
- Sequence
atcgcgacgctgaaggtggagccg[A/T]gcggtcggggagggccaatagcag
- ASB in cell types
- CD4+ T-cells GM12878 (female B-cells) thymus-derived CD34- cells CD8+ T-cells
- ASB for transcription factors
- ZBT26_HUMAN FOXK2_HUMAN BC11B_HUMAN STA5B_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT26_HUMAN | 1.58 | -1.86 | 1.33 | n/a | n/a | |||
| FOXK2_HUMAN | 0.09 | 1.92 | 1.92 | n/a | n/a | |||
| BC11B_HUMAN | n/a | 1.95 | 2.50 | n/a | n/a | |||
| STA5B_HUMAN | n/a | 1.82 | 5.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, body mass index (bmi), college completion, height, infant head circumference, triglycerides
ClinVar bacteremia, susceptibility to, 2, susceptibility to malaria, tuberculosis, susceptibility to
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood