rs4143973 chr19:13156025 C>T
- Sequence
ggagccccacaccgcaggcggtag[C/T]tcaatgcacccgcgtcggagttcc
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney)
- ASB for transcription factors
- GLIS1_HUMAN COE1_HUMAN EGR2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GLIS1_HUMAN | 1.95 | n/a | 2.00 | n/a | n/a | |||
| COE1_HUMAN | 1.24 | -0.26 | 1.37 | n/a | No Hit | |||
| EGR2_HUMAN | 1.80 | -0.47 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Esophagus_Muscularis, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid