rs4148869 chr6:32838799 C>T
- Sequence
gggctcgggcagctttcgctttcg[C/T]ttccccagccaaggccttcattct
- ASB in cell types
- K562 (myelogenous leukemia) H1 (embryonic stem cells) periferal blood macrophages fibroblast of pulmonary artery
- ASB for transcription factors
- BC11B_HUMAN RAD21_HUMAN NCOR1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BC11B_HUMAN | -2.39 | 2.47 | 2.00 | n/a | n/a | |||
| RAD21_HUMAN | 1.45 | 0.58 | 1.23 | n/a | n/a | |||
| NCOR1_HUMAN | 2.16 | -0.99 | 3.00 | n/a | n/a | |||
| FOXK2_HUMAN | 0.23 | 1.46 | 2.44 | n/a | n/a | |||
| MNT_HUMAN | 2.04 | -2.33 | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood