rs41542719 chr6:31271816 T>C
- Sequence
gcccactgagatgaagcggggctc[T/C]ccgcggccgggccgggacacggcg
- ASB in cell types
- foreskin keratinocyte neural cell 22RV1 (prostate carcinoma) SEM (childhood B acute lymphoblastic leukemia)
- ASB for transcription factors
- CTCF_HUMAN CXXC1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.80 | -0.37 | 1.56 | n/a | No Hit | |||
| CXXC1_HUMAN | 2.25 | -2.16 | 1.33 | n/a | n/a | |||
| RAD21_HUMAN | 1.89 | -1.62 | 1.33 | n/a | n/a |
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