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rs416170 chr13:59770946 A>G

Sequence
gtgcctttacagccaaagcaaaag[A/G]taacaggtacaacttgtaaccaaa
ASB in cell types
VCaP (prostate carcinoma)
ASB for transcription factors
ANDR_HUMAN FOXA1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ANDR_HUMAN 1.41 -0.73 2.8·10-41.00 1.94 n/a No Hit
FOXA1_HUMAN 1.30 -0.60 0.051.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP rheumatoid arthritis total cholesterol
GTEx eQTL Brain_Caudate_basal_ganglia Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Nucleus_accumbens_basal_ganglia Esophagus_Mucosa Skin_Sun_Exposed_Lower_leg

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