rs41746 chr7:116803020 A>T
- Sequence
tcttgtaaacaagaaacgctgaat[A/T]caaaggctttgtgaaatcctgccc
- ASB in cell types
- A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte monocyte-derived macrophages
- ASB for transcription factors
- RAD21_HUMAN FOXA1_HUMAN USF1_HUMAN TF65_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.06 | 1.00 | 1.88 | n/a | n/a | |||
| FOXA1_HUMAN | 0.39 | 0.74 | 1.73 | n/a | No Hit | |||
| USF1_HUMAN | -0.03 | 1.21 | 1.67 | n/a | No Hit | |||
| TF65_HUMAN | 1.21 | n/a | 2.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP hdl cholesterol, homa-b, paternal transmission distortion, simpson-angus scale, transmission distortion, triglycerides
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Esophagus_Muscularis, Lung, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid