rs420599 chr3:11846785 C>G
- Sequence
ctgagtgtggggtgggactgcaag[C/G]acacgcaaggattggggcgttggg
- ASB in cell types
- T47D (invasive ductal carcinoma) K562 (myelogenous leukemia) GM12878 (female B-cells)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| T47D (invasive ductal carcinoma) | -0.92 | 1.31 | 2.12 | |||
| K562 (myelogenous leukemia) | -0.91 | 1.58 | 3.50 | |||
| GM12878 (female B-cells) | 0.49 | 0.58 | 1.29 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood