rs420878 chr17:58631716 A>G
- Sequence
agttagaataacgcaacaccaaac[A/G]ctgctatcccactcgtgagagaac
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) SK-N-SH (neuroblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- JUN_HUMAN IRF5_HUMAN FOXK2_HUMAN REST_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 2.64 | n/a | 3.00 | n/a | No Hit | |||
| IRF5_HUMAN | n/a | 2.55 | 1.33 | n/a | n/a | |||
| FOXK2_HUMAN | -2.24 | 2.06 | 1.33 | n/a | n/a | |||
| REST_HUMAN | 2.78 | n/a | 3.00 | n/a | No Hit | |||
| JUND_HUMAN | 2.31 | -1.34 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood