rs42089 chr7:27663321 C>T
- Sequence
aacttttaaattcatttgatttta[C/T]ttaacacaacagtttctcaatact
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ZFHX2_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFHX2_HUMAN | 1.28 | -1.56 | 1.33 | n/a | n/a | |||
| HDAC1_HUMAN | 1.58 | -0.56 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Cells_Cultured_fibroblasts, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg