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rs42102 chr7:27678097 G>C

Sequence
taattctttccaaatgaagtcaca[G/C]aagacacgcctaactccttagtaa
ASB in cell types
K562 (myelogenous leukemia) SK-N-SH (neuroblastoma)
ASB for transcription factors
SMCA4_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN 1.79 -2.10 0.031.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP height serum creatinine
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Tibial Cells_Cultured_fibroblasts Cells_EBV-transformed_lymphocytes Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Testis

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