ADASTRA v1.6.10
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Soos
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adastra.autosome.org
rs42184
chr7:75880134
T
>
G
Sequence
tcatgcaattgagataggaatcta[T/G]atttttttttttattctgtgatgt
ASB in cell types
SK-N-SH (neuroblastoma)
ASB for transcription factors
GATA3_HUMAN
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View in PheLiGe
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA3_HUMAN
-1.10
1.95
1.00
0.02
2.00
n/a
No Hit
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
autism
,
cystatin c in serum
GTEx eQTL
Adipose_Subcutaneous
,
Adipose_Visceral_Omentum
,
Breast_Mammary_Tissue
,
Cells_Cultured_fibroblasts
,
Colon_Transverse
,
Esophagus_Mucosa
,
Esophagus_Muscularis
,
Muscle_Skeletal
,
Nerve_Tibial
,
Skin_Not_Sun_Exposed_Suprapubic
,
Thyroid
,
Whole_Blood
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)