rs4240420 chr9:127578974 A>G
- Sequence
gagccccaaaaggaagggaccgga[A/G]ctggcccagttcctgactcctagc
- ASB in cell types
- HepG2 (hepatoblastoma) periferal blood macrophages T47D (invasive ductal carcinoma) tibial nerve
- ASB for transcription factors
- ETV5_HUMAN EP300_HUMAN TF65_HUMAN HIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ETV5_HUMAN | 2.67 | -3.03 | 1.33 | n/a | No Hit | |||
| EP300_HUMAN | 1.41 | -0.52 | 1.40 | n/a | n/a | |||
| TF65_HUMAN | -3.95 | 2.18 | 2.50 | n/a | No Hit | |||
| HIF1A_HUMAN | 2.15 | n/a | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | -3.09 | 2.11 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Nerve_Tibial, Prostate, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid