rs4240680 chr8:11958988 C>A
- Sequence
acttcagaaaagatacagaactct[C/A]tcagcttgtccacccccaactccc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) HEK293 (embryonic kidney) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 1.25 | 0.15 | 1.83 | n/a | n/a | |||
| SMC3_HUMAN | 1.05 | -0.07 | 1.83 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Amygdala, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Mucosa, Esophagus_Muscularis, Nerve_Tibial, Ovary, Pituitary, Small_Intestine_Terminal_Ileum