rs424079 chr1:2139901 C>A
- Sequence
cgtggggtataaaccatggtaggg[C/A]cacgtctctgagctgtggctgctg
- ASB in cell types
- pancreas K562 (myelogenous leukemia) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| pancreas | -1.33 | 1.71 | 1.33 | |||
| K562 (myelogenous leukemia) | 0.36 | 0.55 | 1.35 | |||
| HEK293 (embryonic kidney) | 0.58 | -0.11 | 1.99 | |||
| MCF7 (Invasive ductal breast carcinoma) | -0.54 | 0.84 | 2.18 | |||
| RH4 (alveolar rhabdomyosarcoma) | 1.37 | -1.64 | 1.33 |
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Motif analysis
No data available
Genetic associations
GRASP chronic kidney disease, height, ldl cholesterol, microalbuminuria, resistance to kuru in aged women despite likely exposure, serum creatinine, stabilized warfarin dose, waist hip ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood