rs424761 chr5:671855 A>G
- Sequence
ggtggcacccacagcaatggaggg[A/G]cagggttgggtgtggggagtgcag
- ASB in cell types
- A549 (lung carcinoma) keratinocytes K562 (myelogenous leukemia) Jurkat (T-cells)
- ASB for transcription factors
- SNAI2_HUMAN RAD21_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.57 | n/a | 1.33 | n/a | No Hit | |||
| RAD21_HUMAN | 0.98 | -0.01 | 1.79 | n/a | n/a | |||
| CTCF_HUMAN | 0.73 | 0.36 | 1.48 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid