rs4249114 chr16:46390790 C>G
- Sequence
atcgaatggaatcatcatcgaata[C/G]aatagaatggaatcatcaaatgga
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN ZNF24_HUMAN HSF1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.93 | 0.47 | 3.37 | n/a | No Hit | |||
| ZFX_HUMAN | 0.75 | 0.89 | 3.23 | n/a | No Hit | |||
| ZNF24_HUMAN | n/a | 0.63 | 4.43 | n/a | n/a | |||
| HSF1_HUMAN | n/a | 1.04 | 3.00 | 3.82 | Concordant | |||
| T2AG_HUMAN | n/a | 0.85 | 2.50 | n/a | n/a |
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Motif analysis
