rs4265560 chr11:15769357 C>T
- Sequence
tatttagaagaatatgtgatcaag[C/T]agaaccagtttttccagtctcact
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- GRHL2_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | 1.34 | -0.16 | 1.54 | 0.07 | Weak Discordant | |||
| REQU_HUMAN | 2.32 | -3.21 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP aortic valve calcium, biploar disorder (bipolar schizoaffective disorder), bipolar disorder in alcoholics, childhood acute lymphoblastic leukemia, ldl cholesterol, lung function, forced expiratory volume in 1 second (fev1) percent predicted (in asthmatic participants), total cholesterol