rs428180 chr1:8218839 A>C
- Sequence
tttgaggaaaatgatgacttggtt[A/C]ttgcgtcactctgaaggtcagaca
- ASB in cell types
- macrophages CD14+ monocytes SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- STAT1_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.23 | n/a | 2.50 | n/a | No Hit | |||
| CEBPB_HUMAN | 1.71 | 0.34 | 1.43 | -1.81 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP ldl cholesterol, prop taste detection threshold, salmonella-induced pyroptosis, total cholesterol