rs4306346 chr12:8396780 T>C
- Sequence
gggcatcggggcggcgcgggctcc[T/C]ccgcgggccgctcgtggtcctctg
- ASB in cell types
- upper lobe of left lung spleen pancreas LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.96 | 0.27 | 1.19 | n/a | No Hit | |||
| SMC3_HUMAN | 0.89 | -0.89 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Colon_Transverse, Lung, Nerve_Tibial, Pituitary, Spleen, Testis, Whole_Blood