rs431246 chr8:26577279 C>G
- Sequence
ggacgctcccgggaagcagccgcc[C/G]tctccggggccgggcgtggccggg
- ASB in cell types
- K562 (myelogenous leukemia) tibial nerve breast tumor tissue
- ASB for transcription factors
- VEZF1_HUMAN ESR1_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| VEZF1_HUMAN | 2.80 | n/a | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 2.06 | -1.64 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.84 | 0.54 | 1.20 | -2.50 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Stomach