rs4332398 chr1:31453929 G>A
- Sequence
aagcaggtgaccaggggaacagat[G/A]tgaactactgattagaactggcag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- TIF1A_HUMAN MTG8R_HUMAN MTG16_HUMAN ARI1B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TIF1A_HUMAN | 1.79 | -1.84 | 1.33 | n/a | n/a | |||
| MTG8R_HUMAN | 2.25 | -2.16 | 1.33 | n/a | n/a | |||
| MTG16_HUMAN | 2.08 | -1.99 | 1.33 | n/a | n/a | |||
| ARI1B_HUMAN | 1.96 | -2.21 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood