rs434154 chr5:157149146 T>C
- Sequence
gcatattgggtcctcctgagttgt[T/C]acttgcaggctgaagaacctaaaa
- ASB in cell types
- A549 (lung carcinoma) K562 (myelogenous leukemia) A673 (Ewing sarcoma) prostate gland
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | 0.00 | 0.93 | 1.80 | n/a | n/a | |||
| SMC3_HUMAN | -0.33 | 1.07 | 1.80 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Whole_Blood