rs4347731 chr19:48881897 A>G
- Sequence
agggtgtgtaaactacaattccca[A/G]taggctttgcaatagggtggcatc
- ASB in cell types
- GM12878 (female B-cells) germinal center B-cells
- ASB for transcription factors
- ZN143_HUMAN BCL6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN143_HUMAN | 0.34 | 0.34 | 1.22 | 3.92 | Concordant | |||
| BCL6_HUMAN | 1.88 | -1.59 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP abnormal involuntary movement scale, amyotrophic lateral sclerosis (als), eye color, maternal transmission distortion, microalbuminuria, schizophrenia, spine bone mineral density (bmd), transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid