rs435682 chr6:160306374 G>A
- Sequence
aaacttcccaaatgcttgtgtgcc[G/A]tgctgactttctaactgggctcag
- ASB in cell types
- VCaP (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.29 | 0.15 | 1.59 | n/a | No Hit | |||
| ANDR_HUMAN | 0.76 | -0.10 | 1.85 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Colon_Transverse, Esophagus_Mucosa, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis