rs4357254 chr8:127695050 G>C
- Sequence
aattcttcagagaaaggcgccact[G/C]ttggccttagaaaccaaccaccct
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOS_HUMAN RFX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | 3.06 | n/a | 3.00 | n/a | n/a | |||
| RFX1_HUMAN | 1.84 | n/a | 2.00 | 0.42 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), ldl cholesterol, triglycerides