rs436466 chr1:153033120 A>G
- Sequence
ttgctttgggcatccagggctgga[A/G]aagggctctcctcttgcaactcag
- ASB in cell types
- K562 (myelogenous leukemia) coronary artery smooth muscle adrenal gland
- ASB for transcription factors
- CTCF_HUMAN JUND_HUMAN ATF3_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.82 | 0.33 | 1.52 | n/a | No Hit | |||
| JUND_HUMAN | 0.58 | n/a | 1.33 | n/a | No Hit | |||
| ATF3_HUMAN | 1.69 | -0.24 | 1.78 | n/a | No Hit | |||
| JUN_HUMAN | 0.73 | 0.12 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Mucosa, Ovary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis