rs439336 chr1:153119895 G>C
- Sequence
agtgctgggagggtctccagagta[G/C]atttctttgtgtactagcttctta
- ASB in cell types
- K562 (myelogenous leukemia) LHSAR (prostate epithelial cells)
- ASB for transcription factors
- ANDR_HUMAN NCOR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | -0.61 | 1.79 | 1.75 | n/a | No Hit | |||
| NCOR1_HUMAN | 1.75 | -1.20 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, fasting blood glucose, total cholesterol
GTEx eQTL Adipose_Visceral_Omentum, Breast_Mammary_Tissue, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis