rs4420487 chr15:85825917 A>G
- Sequence
atggattttgtgaatgcagccact[A/G]tttattgatgtaatcgctccaccc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) breast tumor tissue
- ASB for transcription factors
- PKNX1_HUMAN FOXA1_HUMAN CREB1_HUMAN REQU_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PKNX1_HUMAN | -1.91 | 1.69 | 1.33 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.22 | 0.90 | 1.72 | 1.16 | Weak Concordant | |||
| CREB1_HUMAN | -1.17 | 1.51 | 1.50 | n/a | No Hit | |||
| REQU_HUMAN | -1.98 | 1.77 | 1.50 | n/a | n/a | |||
| GATA3_HUMAN | -1.56 | 1.37 | 1.67 | n/a | No Hit |
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Motif analysis
