rs442981 chr21:42992625 C>T
- Sequence
cttctggaggcgctttctgaaatc[C/T]gtcagctggaacacgagctgggga
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- HDAC2_HUMAN NFIC_HUMAN KAISO_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC2_HUMAN | -0.33 | 1.73 | 1.33 | n/a | n/a | |||
| NFIC_HUMAN | -1.64 | 1.92 | 1.33 | n/a | No Hit | |||
| KAISO_HUMAN | 1.77 | -1.42 | 1.33 | n/a | No Hit | |||
| JUN_HUMAN | 1.11 | -1.39 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid