rs443326 chr15:67944195 A>G
- Sequence
cgctcttgttgccaggccctggac[A/G]ctctgaaccccagcctgggctcct
- ASB in cell types
- VCaP (prostate carcinoma) BEAS-2B (bronchial epithelium) stomach LHSAR (prostate epithelial cells)
- ASB for transcription factors
- ANDR_HUMAN EP300_HUMAN GCR_HUMAN FOXA1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.09 | 0.21 | 1.53 | n/a | No Hit | |||
| EP300_HUMAN | 1.47 | -0.28 | 1.29 | n/a | n/a | |||
| GCR_HUMAN | 1.38 | -0.04 | 1.39 | -2.99 | Concordant | |||
| FOXA1_HUMAN | 1.16 | -0.35 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Muscle_Skeletal, Nerve_Tibial, Testis