rs444144 chr19:23855883 G>A
- Sequence
gtcccagagccattaggtggctcc[G/A]gaggcaaagaccgcaaaggtttgg
- ASB in cell types
- LNCaP (prostate carcinoma) liver LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.13 | 1.64 | 1.35 | 0.16 | Weak Concordant | |||
| RAD21_HUMAN | -2.23 | 2.15 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid