rs445521 chr19:18058504 T>G
- Sequence
tgtctgaaaccggaaaagtctgtt[T/G]agcaaacgcggtgggaggaggcag
- ASB in cell types
- HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) foreskin keratinocyte
- ASB for transcription factors
- GRHL2_HUMAN RAD21_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GRHL2_HUMAN | 1.33 | -0.40 | 1.85 | n/a | No Hit | |||
| RAD21_HUMAN | 1.55 | -0.88 | 1.96 | n/a | n/a | |||
| KDM5B_HUMAN | 1.48 | 0.45 | 2.75 | n/a | n/a |
Items per page:
1 – 3 of 3