rs451354 chr16:11975923 A>G
- Sequence
gccatatcttaaaacctaattcag[A/G]tcgtatcactcctctgcttgagtc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- SMCE1_HUMAN REQU_HUMAN SMCA4_HUMAN TIF1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMCE1_HUMAN | 2.93 | n/a | 2.00 | n/a | n/a | |||
| REQU_HUMAN | 2.33 | -1.93 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 2.20 | -0.47 | 2.00 | n/a | n/a | |||
| TIF1A_HUMAN | 1.76 | -0.87 | 2.00 | n/a | n/a | |||
| BCOR_HUMAN | 2.46 | n/a | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Uterus, Whole_Blood