rs451388 chr19:44002969 G>C
- Sequence
agcacttccggtgtgtgagcctgc[G/C]gttgctacataaccgcgtagtttg
- ASB in cell types
- HEK293 (embryonic kidney) CD14+ monocytes VCaP (prostate carcinoma) monocyte-derived macrophages
- ASB for transcription factors
- STAT1_HUMAN ZBT26_HUMAN SP2_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 2.25 | n/a | 2.50 | n/a | No Hit | |||
| ZBT26_HUMAN | n/a | 3.90 | 4.00 | n/a | n/a | |||
| SP2_HUMAN | n/a | 4.25 | 5.00 | n/a | No Hit | |||
| GLIS1_HUMAN | n/a | 2.51 | 4.00 | n/a | n/a | |||
| ZN394_HUMAN | n/a | 3.05 | 4.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood