rs455739 chr3:161371672 G>A
- Sequence
ttgtgtccaaccgcactgctccca[G/A]cgactccttccagaagagaatgcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN CLOCK_HUMAN ZNF24_HUMAN ZN444_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.34 | -0.29 | 2.35 | n/a | No Hit | |||
| CLOCK_HUMAN | 2.40 | -1.55 | 1.50 | n/a | No Hit | |||
| ZNF24_HUMAN | 2.48 | n/a | 1.50 | n/a | n/a | |||
| ZN444_HUMAN | 1.93 | -2.24 | 1.50 | n/a | n/a | |||
| ELF1_HUMAN | 2.16 | -2.46 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellar_Hemisphere, Colon_Transverse, Esophagus_Mucosa, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg