rs455817 chr5:55219262 T>C
- Sequence
ggccgccaagtgcaagaagtagac[T/C]tcatgttaagaactgtgaaggtca
- ASB in cell types
- foreskin keratinocyte MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CEBPB_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.28 | -1.15 | 1.33 | n/a | No Hit | |||
| CTCF_HUMAN | 0.51 | 1.72 | 1.56 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid