rs4558922 chr4:56656523 C>T
- Sequence
ccccggtaggcggccttctgtctc[C/T]gcagtgggttggcgctttggggcc
- ASB in cell types
- Peyer's patch neural progenitors NB69 (neuroblastoma)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| Peyer's patch | 1.63 | -1.39 | 1.33 | |||
| neural progenitors | 1.23 | -0.31 | 1.11 | |||
| NB69 (neuroblastoma) | 1.73 | -1.35 | 1.33 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Kidney_Cortex, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Thyroid, Uterus, Whole_Blood