rs457759 chr6:5115362 C>A
- Sequence
ggctttggcggcacacttatcatg[C/A]cgcagaacaaacacgcttctcccc
- ASB in cell types
- HepG2 (hepatoblastoma)
- ASB for transcription factors
- SKI_HUMAN TBX3_HUMAN SMAD4_HUMAN SOX5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SKI_HUMAN | 2.45 | -3.72 | 2.00 | n/a | n/a | |||
| TBX3_HUMAN | 2.68 | n/a | 2.00 | n/a | No Hit | |||
| SMAD4_HUMAN | 2.39 | -3.65 | 2.00 | n/a | No Hit | |||
| SOX5_HUMAN | 2.18 | n/a | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.82 | 0.62 | 1.45 | n/a | No Hit |
Items per page:
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood