rs459113 chr20:54064046 C>A
- Sequence
tgtgtttgagggtttggcactttg[C/A]cactgggggttgattgtggaggtt
- ASB in cell types
- GM12878 (female B-cells) L1236 (Hodgkin lymphoma)
- ASB for transcription factors
- SMAD1_HUMAN BHE40_HUMAN ELF1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMAD1_HUMAN | 2.55 | -3.17 | 1.50 | n/a | n/a | |||
| BHE40_HUMAN | 1.49 | -1.76 | 1.33 | n/a | No Hit | |||
| ELF1_HUMAN | 2.26 | -2.99 | 1.50 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.69 | -0.03 | 1.50 | n/a | n/a | |||
| NFIC_HUMAN | 2.18 | -2.02 | 2.00 | -4.38 | Concordant |
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Motif analysis
