rs460106 chr22:21452112 T>C
- Sequence
ttctgttcagttgctttaaaatga[T/C]tttttggctttatcaaagtaattc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- SPT5H_HUMAN RING2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 2.80 | n/a | 2.00 | n/a | n/a | |||
| RING2_HUMAN | 2.44 | -3.17 | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP biploar disorder (bipolar schizoaffective disorder), end-of-induction minimal residual disease (pediatric acute lymphoblastic leukemia treatment), hdl cholesterol, hip bone mineral density (bmd), irritible bowel syndrome, maternal transmission distortion, partial epilepsy, rheumatoid arthritis, spine bone mineral density (bmd), sporadic creutzfeldt-jakob disease, total cholesterol, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid