rs460137 chr5:112861252 A>C
- Sequence
ggcgatgagaaatcgcggacgcgg[A/C]accatttcttgggcaggacttccg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- GABPA_HUMAN ZBT40_HUMAN ELF1_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.70 | -0.02 | 1.48 | n/a | No Hit | |||
| ZBT40_HUMAN | 1.02 | -1.59 | 1.56 | n/a | n/a | |||
| ELF1_HUMAN | 1.15 | -0.84 | 1.67 | n/a | No Hit | |||
| GABP1_HUMAN | 0.55 | -0.91 | 1.67 | n/a | n/a | |||
| NFIC_HUMAN | 3.12 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Hypothalamus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood