rs460470 chr20:54064628 G>A
- Sequence
ggaggtgggtggaggctgccctcc[G/A]cagtctcgctctcctgcatctctg
- ASB in cell types
- GM12878 (female B-cells) L1236 (Hodgkin lymphoma)
- ASB for transcription factors
- NFKB1_HUMAN NFXL1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFKB1_HUMAN | -2.32 | 2.14 | 1.33 | n/a | No Hit | |||
| NFXL1_HUMAN | -2.09 | 2.17 | 2.00 | n/a | n/a | |||
| IKZF1_HUMAN | 1.22 | 0.03 | 1.56 | n/a | No Hit |
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