rs4619453 chr17:57126840 T>C
- Sequence
ccggggtttgtcaataaagtttta[T/C]tggaacaggcatgaccatttgttt
- ASB in cell types
- LNCaP (prostate carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- FOXA1_HUMAN FOXA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.43 | 1.49 | 1.72 | n/a | No Hit | |||
| FOXA3_HUMAN | n/a | 2.68 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid