rs465480 chr6:80004496 G>C
- Sequence
accctaccaacccaggcgccgcac[G/C]ggtggggtcgcggccgcaggctct
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) MDA-MB-453 (breast adenocarcinoma) Jurkat (T-cells)
- ASB for transcription factors
- BHE40_HUMAN NR2C1_HUMAN ETV1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BHE40_HUMAN | 3.50 | n/a | 1.33 | n/a | No Hit | |||
| NR2C1_HUMAN | -0.61 | 2.26 | 1.78 | n/a | No Hit | |||
| ETV1_HUMAN | -2.38 | 2.17 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Spleen, Thyroid, Whole_Blood