rs4657000 chr1:161258484 A>C
- Sequence
cacactccttccattccactcccc[A/C]ccttgccttcttcgtgtacatctc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- ZN398_HUMAN PKNX1_HUMAN TZAP_HUMAN SP2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN398_HUMAN | n/a | 3.04 | 2.00 | n/a | n/a | |||
| PKNX1_HUMAN | 0.85 | 0.03 | 1.17 | n/a | No Hit | |||
| TZAP_HUMAN | n/a | 2.32 | 2.00 | n/a | n/a | |||
| SP2_HUMAN | -1.71 | 2.07 | 2.00 | -1.44 | Weak Discordant |
Items per page:
1 – 4 of 4
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis