rs4670830 chr2:38216177 A>G
- Sequence
atttatcttgggtgcaatacctgg[A/G]agtagaactgctgagtcatgcagt
- ASB in cell types
- A549 (lung carcinoma) HCC70 (ductal breast carcinoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN EP300_HUMAN CEBPB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | -0.26 | 1.33 | 1.44 | n/a | No Hit | |||
| JUN_HUMAN | 0.04 | 1.02 | 1.26 | n/a | No Hit | |||
| EP300_HUMAN | -0.28 | 1.31 | 1.50 | n/a | n/a | |||
| CEBPB_HUMAN | 0.04 | 1.21 | 1.45 | n/a | No Hit | |||
| STAT3_HUMAN | 1.76 | -1.06 | 1.50 | -5.10 | Concordant |
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Motif analysis
